Selected Publications

Muigano, M. N., Musila, F. M., & Li, Z. (2026). Pangenome and Comparative Genomics Analyses Reveal Patterns of Quorum Sensing and Antimicrobial Resistance in Salmonella Lineages from African Food Chains. Foodborne Pathogens and Disease, 15353141251413375. https://doi.org/10.1177/15353141251413375 

Muigano, M. N. (2026). Functional genetic signatures of the gut microbiome in cardiometabolic diseases: mechanisms and translational opportunities. Frontiers in Microbiomes, 5, 1847345.  https://doi.org/10.3389/frmbi.2026.1847345

Muigano, M. N., Liu, J., Liu, X., Luo, P., Li, Z., & Li, J. (2025). The impact of dietary patterns on the human gut microbiome and its health significance: a review. The FASEB Journal, 39(19), e71072. https://doi.org/10.1096/fj.202502040R

Muigano, M. N., & Kamau, G. W. (2026). Protein language modeling and supervised machine learning reveal the functional landscape of antimicrobial resistance genes in African metagenomes. bioRxiv, 2026-01. https://doi.org/10.64898/2026.01.24.701459

Martin Muigano, Sudhahar Tamizhan, Maryam Nahari, Tofick Wekesa, Fredrick Musila, & Hardik Shah. (2026). From Genome Mining to Smart Bioreactors: Digital Workflows for Microbial Secondary Metabolite Discovery and Production. In Ogwu, M. C., & Izah, S. C. (2026). Digital Transformations in Microbiology: From Smart Labs to AI-driven Discovery. IGI Global Scientific Publishing. ISBN: 9798337389301. https://books.google.co.ke/books?id=71Ud0gEACAAJ